IN VITRO AND IN SILICO ANTIMICROBIAL STUDY OF STANNANE OF PYRIDOXAL 5-PHOSPHATE
DOI:
https://doi.org/10.22159/ijpps.2017v9i2.15002Keywords:
Stannane, Insilco and In vitro antibacterial study, Computational docking, Protein Data Bank files (PDB), Escherichia coli, Yersinia enterocolitica, Burkholderia pseudomallei, Human cytomegalovirus, Staphylococcus aureusAbstract
Objective: The main objective of this research work is to synthesize a novel stannane of pyridoxal 5-phosphateand to study its antibacterial property.
Methods: Conventional method was used to synthesize the stannane of pyridoxal 5-phosphateand its characterization was carried using UV-visible and 1H NMR. The antibacterial study was carried against, Staphylococcus aureus (gram positive) and Escherichia coli 1610(gram negative) using well diffusion method. In silico antimicrobial was carried out using computational software iGemDock v2.1 tool.(Graphical Drug Design system for Docking, Screening, and Post-analysis), computational docking was carried out using different PDB (Protein Data Bank) files (2I42, 3EOO, 3D2U and 3D2Y). The structure was optimized prior docking using Gaussian software, and the method followed was Energy (Ground state) Hartree-Fork.
Results: It was observed that the stannane of pyridoxal 5-phosphateinhibited bacterial growth of Staphylococcus aureus (gram positive) and Escherichia coli 1610 (gram negative) in vitro antibacterial study. The complex has shown good docking results on almost all the receptors, with interaction supporting the fitting of the drug to the target molecules. The novel complex has shown good antibacterial activity (theoretically) in insilico studies. It was found to having a good potency to efficiently inhibit the microbes Burkholderia pseudomallei, Human cytomegalovirus, Yersinia enterocolitica and Escherichia coli, based on the interaction profile. The synthesized stannane was found to be effective in halting the undesirable effects of selected PDB files.
Conclusion: On the basis of the above findings in the present research work, the novel complex was found to be a good antimicrobial agent and our future studies will aim design of novel selective and potent inhibitors. Further in vitro studies of this compound against these bacteria will lead to a new pathway to a novel antibacterial drug discovery.
Downloads
References
Rehman W, Badshah A, Khan S, Tuyet le TA. Synthesis, characterization, antimicrobial and antitumor screening of some di organotin (IV) complexes of 2-[(9H-purin-6-ylimino)]-phenol. Eur J Med Chem 2009;44:3981-5.
Rehman W, Baloch MK, Badshah A, Ali S. Synthesis, characterization and biological study of di organotin (IV) complexes of monomethyl phthalate. Spectrochim Acta Part A 2006;65:689-94.
Akhtar S, Khan MA, Akhtar H, Shahid K. Synthesis, characterization, in vitro antibacterial and antifungal assays of organotin (IV) complexes of nimesulide. Int J Pharm Sci Rev Res 2014;28:106-10.
Rahman A, Choudhary MI, Thomsen WJ. Bioassay Techniques for Drug Development, Harwood Academic, Amsterdam. The Netherlands; 2001.
Mala Nath, Yadav R, G Eng, Musingarimi P. Characteristic spectral studies and in vitro antimicrobial and in vivo multi-infection antifungal activities in mice of new organotin (IV) derivatives of heterocyclic amino acid. Appl Organomet Chem 1999;13:29-37.
Armarego WLF, Perrin DD. 4th edition. Purification of Laboratory Chemicals, Butterworth-Heinemann, Oxford, UK; 1996.
Aniyery RB, Gupta A, Singh P, Khatri C, Pathak A. Synthesis, characterization, biological activities and computational anticancer study of Dibutylbis [(2-isopropyl-5-ethylcyclohexyl) oxy] stannane. J Chem Pharm Sci 2015;8:957-63.
Basu Baul TS. Antimicrobial activity of organotin (IV) compounds. Appl Organometal Chem 2008;22:195-204.
Shete CC, Wadkar S, Inamdar F, Gaikwad N, Patil K. Antibacterial activity of amorphophallus konk anesis and amorphophallus bulbifer tuber. Asian J Pharm Clin Res 2015;8:98-102.
Himratul-Aznita WH, Mohd-Al-Faisal N, Fathilah AR. Determination of the percentage inhibition of diameter growth (PIDG) of Piper bête lcrude aqueous extract against oral Candida species. J Med Plants Res 2011;5:878-84.
Hsu KC, Chen YF, Lin SR, Yang JM. iGEMDOCK: a graphical environment of enhancing GEMDOCK using pharmacological interactions and post-screening analysis. BMC Bioinformatics 2011;12(Suppl 1):S33.
Balavignesh V, Srinivasan E, Ramesh Babu NG, Saravanan N. Molecular docking study on NS5B polymerase of hepatitis c virus by a screening of volatile compounds from acacia concinna and ADMET prediction. Int J Pharm Life Sci 2013;4:2548-58.
Noel M O'Boyle, Banck M, James CA, Morley C, Vandermeersch T, Hutchison GR. Open babel: an open chemical toolbox. J Chemoinf 2011;3:33.
Manuela B, Nigel HG, Qian-Sheng Y, A Vincenza. Lipid in health and disease. Scholars Res Library 2009;1216:2730-8.
Karpakavalli M, Kumar P, Sanglimuthu A, Kumar EP. Docking, synthesis, characterization and anticancer activity of 4-(4’-Hydroxy, 3’-Methoxy) Phenyl, But-2-One-3-Ene, a curcumin analogue precursor. Int J Curr Pharm Res 2016;8:1-5.
Sam N, Affan MA, Salam MA, Ahmad FB, Asaruddin MR. Synthesis, spectral characterization and biological activities of organotin (IV) complexes with ortho-vanillin-2-hydrazinopyridine (VHP). Open J Inorg Chem 2012;2:22-7.
Yeaman MR, Yount NY. Mechanisms of antimicrobial peptide action and resistance. Pharmacol Rev 2003;55:27–55.
Basu Baul TS. Antimicrobial activity of organotin (IV) compounds a review. Appl Organometal Chem 2008;22:195-204.
Basavaraju B, Bhojya Naik HS, Prabhakara MC. Transition metal complexes of methyl quinoline [3,2-b][1,5]benzodiazepine and methyl quinoline [3,2-b][1,5]benzoxazepine: synthesis, character-risation, and antimicrobial studies. E-J Chem 2007:4:39-45.
Srivastava RS. Pseudotetrahedral Co(II), Ni(II) and Cu(II) complexes of N1-(O-chlorophenyl)-2-(2′,4′-dihydroxyphenyl)-2-benzylazomethine their fungicidal and herbicidal activity. Inorg Chim Acta 1981;56:65-7.
Chohan ZH, Arif M, Muhammad A Akhtar, Supuran CT. Metal-based antibacterial and antifungal agents: synthesis, characterization, and in vitro biological evaluation of Co(II), Cu(II), Ni(II), and Zn(II) complexes with amino acid-derived compounds. Bioinorg Chem Appl 2006;83131:1-13.
Kumar KM, Anitha P, Sivasakthi V, Bag S, Lavanya P, Anbarasu A, et al. In silico study on penicillin derivatives and Cephalosporins for upper respiratory tract bacterial pathogens. 3 Biotech 2014;4:241-51.
Kerff F, Petrella S, Mercier F, Sauvage E, Herman R, Pennartz A, et al. Specific structural features of the n-acetylmuramic-l-alanine amidase amid from escherichia coli and mechanistic implications for enzymes of this family. J Mol Biol 2010;397:249-59.
Protein Data Bank in Europe. Available from: https://www.ebi.ac.uk/pdbe/entry/pdb/3d2y/biology. [Last accessed on 26 Nov 2016]
Protein Data Bank in Europe. Available from: https://www.ebi.ac.uk/pdbe/entry/pdb/3d2u [Last accessed on 26 Nov 2016].
Beck S, Barrell BG. Human cytomegalovirus encodes a glycoprotein homologous to MHC class-I antigens. Nature 1988;331:269-72.
Browne H, Smith G, Beck S, Minson T. A complex between the MHC class I homologue encoded by human cytomegalovirus and beta 2 microglobulins. Nature 1990;347:770-2.
Wagner CS, Ljunggren HG, Achour A. Immune modulation by the human cytomegalovirus-encoded molecule UL18, a mystery yet to be solved. J Immunol 2008;180:19-24.
Black DS, Bliska JB. Identification of p130Cas as a substrate of YersiniaYopH (Yop51), a bacterial protein tyrosine phosphatase that translocates into mammalian cells and targets focal adhesions. EMBO J 1997;16:2730-44.
Galán JE, Collmer A. Type III secretion machines: bacterial devices for protein delivery into host cells. Science 1999;284:1322-8.
Wulff-Strobel CR, Williams AW, Straley SC. LcrQ and SycH function together at the Ysc type III secretion system in Yersinia pestis to impose a hierarchy of secretion. Mol Microbiol 2002;43:411-23.
Stuckey JA, Schubert HL, Fauman EB, Zhang ZY, Dixon JE, Saper MA. Crystal structure of Yersinia protein tyrosine phosphatase at 2.5Ã… and the complex with tungstate. Nature 1994;370:571-5.
Sabbagh G, Murad T. An in silico study of novel fluoroquinolones as inhibitors of DNA gyrase of staphylococcus aureus. Int J Pharm Pharm Sci 2016;8:67-75.
Upton AM, McKinney JD. The role of the methyl citrate cycle in propionate metabolism and detoxification in mycobacterium smegmatis. Microbiology 2007;153:3973-82.